Optical imaging methods using calcium indicators are critical for monitoring the activity of large neuronal populations in vivo. Imaging experiments typically generate a large amount of data that needs to be processed to extract the activity of the imaged neuronal sources. While deriving such processing algorithms is an active area of research, most existing methods require the processing of large amounts of data at a time, rendering them vulnerable to the volume of the recorded data, and preventing real-time experimental interrogation. Here we introduce OnACID, an Online framework for the Analysis of streaming Calcium Imaging Data, including i) motion artifact correction, ii) neuronal source extraction, and iii) activity denoising and deconvolution. Our approach combines and extends previous work on online dictionary learning and calcium imaging data analysis, to deliver an automated pipeline that can discover and track the activity of hundreds of cells in real time, thereby enabling new types of closed-loop experiments. We apply our algorithm on two large scale experimental datasets, benchmark its performance on manually annotated data, and show that it outperforms a popular offline approach.

We consider the problem of repeated bidding in online advertising auctions when some side information (e.g.

Stimulus-driven brain-computer interfaces (BCIs), such as the P300 speller, rely on using a sequence of sensory stimuli to elicit specific neural responses as control signals, while a user attends to relevant target stimuli that occur within the sequence. In current BCIs, the stimulus presentation schedule is typically generated in a pseudo-random fashion. Given the non-stationarity of brain electrical signals, a better strategy could be to adapt the stimulus presentation schedule in real-time by selecting the optimal stimuli that will maximize the signal-to-noise ratios of the elicited neural responses and provide the most information about the user's intent based on the uncertainties of the data being measured. However, the high-dimensional stimulus space limits the development of algorithms with tractable solutions for optimized stimulus selection to allow for real-time decision-making within the stringent time requirements of BCI processing. We derive a simple analytical solution of an information-based objective function for BCI stimulus selection by transforming the high-dimensional stimulus space into a one-dimensional space that parameterizes the objective function - the prior probability mass of the stimulus under consideration, irrespective of its contents. We demonstrate the utility of our adaptive stimulus selection algorithm in improving BCI performance with results from simulation and real-time human experiments.

This paper introduces a distillation framework for an ensemble of entropy-optimal Sparse Probabilistic Approximation (eSPA) models, trained exclusively on satellite-era observational and reanalysis data to predict ENSO phase up to 24 months in advance. While eSPA ensembles yield state-of-the-art forecast skill, they are harder to interpret than individual eSPA models. We show how to compress the ensemble into a compact set of "distilled" models by aggregating the structure of only those ensemble members that make correct predictions. This process yields a single, diagnostically tractable model for each forecast lead time that preserves forecast performance while also enabling diagnostics that are impractical to implement on the full ensemble. An analysis of the regime persistence of the distilled model "superclusters", as well as cross-lead clustering consistency, shows that the discretised system accurately captures the spatiotemporal dynamics of ENSO. By considering the effective dimension of the feature importance vectors, the complexity of the input space required for correct ENSO phase prediction is shown to peak when forecasts must cross the boreal spring predictability barrier. Spatial importance maps derived from the feature importance vectors are introduced to identify where predictive information resides in each field and are shown to include known physical precursors at certain lead times. Case studies of key events are also presented, showing how fields reconstructed from distilled model centroids trace the evolution from extratropical and inter-basin precursors to the mature ENSO state. Overall, the distillation framework enables a rigorous investigation of long-range ENSO predictability that complements real-time data-driven operational forecasts.

Neural Information Processing Systems http://nips.cc/

One challenging modality for real-time processing is multi-photon calcium imaging (CI).

These designs enable LE3D to perform real-time novel view synthesis, HDR rendering, refocusing, and tone-mapping changes.

To achieve real-time response, recent studies have focused on lightweight neural network models.

Real-time decision-making gets more attention in the big data era.